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Durham e-Theses
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Cloning and characterisation of heat shock and wound-induced genes in pea (pisum sativum L.)

Dhankher, Om Parkash (1997) Cloning and characterisation of heat shock and wound-induced genes in pea (pisum sativum L.). Doctoral thesis, Durham University.



Plant productivity in many regions of the world is limited primarily as a result of environmental stresses. High temperature and wounding caused by pest and pathogen infection are among the main factors accounting for unpredictable and often severe yield losses worldwide. These stresses, force the plants to alter then gene expression in order to adapt to the changed environment. Attempts were made in the study to isolate and characterise the differentially expressed heat shocked and wound-induced genes to understand the underlying molecular mechanism of heat shock and wounding response. The isolation of the promoters and their use to derive the tissue-specific and high expression of the linked coding sequences will be proved practically more significant. A cDNA clone designated LP 19 was isolated from a differential screening of a cDNA library prepared from lignifying pods of pea line L59. Sequence homology analysis showed that LP19 belongs to the hsp70 gene family. Northern analysis of RNA from pods from pea lines of different genotypes, showing the presence or absence of pod lignification, showed that LP 19 expression was specifically associated with lignification. Several cDNA species derived from transcripts of the LP 19 gene were subsequently isolated, which showed varying positions of poly (A) addition to the 3' untranslated region. Southern blotting of genomic DNA indicated the presence of single gene corresponding to LP 19.The pea hsp70 gene corresponding to LP 19 was isolated from a pea genomic library using LP 19 as a probe. The pea hsp70(LP19) gene predicts an open reading frame encoding a polypeptide of 648 amino acid residues. This sequence is similar to other plant hsp70 proteins. However, unlike most other plant hsp70 genes, the pea hsp70(LP19) gene lacks an intron. 1.8 kb of 5' flanking sequence of hsp70(LP19) gene was also sequenced. The promoter region contains 6 putative consensus heat shock elements (HSEs) as well as 4 A-T rich sites upstream from TATA box. Induction of gene expression of the pea hsp70(LP19) was observed in all organs of the plant after heat shock; the highest level of expression was observed in root, followed by stem and least in leaves. A similar expression pattern for a corresponding gene was observed in chickpea (Cicer arietinum L.). Other stress conditions such as salt stress and wounding failed to induce the expression of hsp70LP(19) gene both in pea and chickpea. The pea hsp70(LP19) promoter region, including 1.8 kb 5'-flanking sequence, and the first 18 amino acids of the coding region, was fused with coding sequence for P- glucuronidase (GUS). Tobacco plants were transformed with this chimaeric gene in order to study tissue specific and developmental expression of the hsp70(LP19) promoter. Histological staining of GUS activity in transgenic tobacco plants showed that protein was present predominantly in the phloem tissue in stem, root and petioles In addition, developmental expression of the hsp70(LP19) gene promoter, without heat shock, was observed in petals, pollen grains, developing seeds as well as in germinating seeds and seedlings at different stages of growth. Quantitative assay of GUS activity by fluorometric assay was used to follow the time course of protein accumulation. Activity was detected within few minutes of the start of heat shock and increased to a maximum after 6 hrs. A high level of GUS activity was observed only in the heat shocked parts of the plant; no endogenous signal that spread systemically from the heat shocked areas to the rest of the plant was observed.Pea and chickpea plants showed a transient increase of polyphenol oxidase (PPO) with maximum level at 48 hrs after wounding. No systemic induction of PPO was observed in unwounded parts in response to both wounding and MeJA treatment. In order to isolate transcripts expressed differentially in response to wounding, a pea subtractive cDNA library was made. 21 subtracted cDNA clones were partially sequenced. Most of the subtracted cDNA clones showed homology with wound or pathogen induced sequences. Northern analysis of the genes corresponding to the subtracted cDNA clones (SC3, SC7, SC12, SC33, SC57 and SC58), indicated differential expression in response to wounding. Full length or nearly full length cDNAs corresponding to 4 subtracted cDNA clones, designated SC10, SC15, SC57 and SC58, were isolated and sequenced. These cDNA clones will be further studied and efforts will be made to isolate their promoters. The tissue-specific expression will be carried out by using promoter-reporter system. These isolated cDNA clones were partially characterised and will be available for further studies to isolate their respective promoters. The tissue specific expression will be carried out by using promoter-reporter system.

Item Type:Thesis (Doctoral)
Award:Doctor of Philosophy
Thesis Date:1997
Copyright:Copyright of this thesis is held by the author
Deposited On:13 Sep 2012 15:52

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